agalactiae database [28] was used for allele and sequence type (ST) assignments. Sequences of novel alleles were submitted to the database curator for allocation of new allele numbers and Vorinostat STs; these are now available in the database. The unweighted pair group method in PHYILIP and Phylodendron was used to visualize the relationship between allelic profiles obtained from the

isolates. The complete allelic profile list from the S. agalactiae MLST database was downloaded (last accessed 7 November 2012) [28] and eBURST groups were identified based on sharing of 6 out of 7 alleles using standard eBURST methodology [29]. In addition, a population snapshot of the entire S. agalactiae population was created in eBURST to show the position of STs from our study in relation to all known STs, which predominantly originate from isolates of human origin. Finally, for STs that were identified Selleck AP26113 in the current study and that did not form part of an eBURST group, the existence of double locus variants (DLVs) and

triple locus variants (TLVs) was explored via ST query in the S. agalactiae MLST database [28]. Virulence genes: three-set genotyping A 3-set genotyping system, comprising MS, surface protein gene profiles and MGE profiles, was used. Molecular serotyping was performed using multiplex-PCR assays [16]. Non-typeable (NT) isolates were further investigated using other primer sets [30] and serosubtyping of MS III isolates was performed [31]. Presence of surface protein genes was determined by PCR and selleck compound sequencing of PCR products, using primers targeting the bca, bac, alp1, alp2, alp3 and alp4 genes [32]. Finally, the prevalence of 7 MGE, corresponding to 1 group II intron (GBSi1) and 6 insertion sequences (IS1381, IS861, IS1548, ISSa4, ISSag1 and ISSag2) was evaluated by PCR and amplicon identity was confirmed by sequencing of PCR products [23, 33]. Results Isolate collection and identification All isolates were Lancefield Group B, Gram-positive cocci appearing

in pairs and chains. They were either β-haemolytic or non-haemolytic on sheep blood agar (Figure 1). All were confirmed as S. agalactiae by species-specific PCR. PFGE analysis All isolates were typeable by SmaI macrorestriction and 13 pulsotypes were identified. Pulsotypes were indistinguishable when multiple isolates from a 4-Aminobutyrate aminotransferase single outbreak were analysed. In some cases, pulsotypes were also indistinguishable for isolates from different host species or countries, e.g. for bullfrog and tilapia isolates from Thailand or for tilapia isolates from Honduras, Colombia and Costa Rica (Figure 1). Despite efforts to identify potential epidemiological relationships between farms sharing the same pulsotype, e.g. through shared broodstock or feed companies, no such links could be identified and each outbreak is considered to be epidemiologically independent. MLST and eBURST analysis Among the 34 S. agalactiae isolates, 8 STs were observed, including 2 new STs, i.e.