Furthermore, the addition of methionine completely corrects the growth defect of

the dnaK null mutant at 37°C and recovers most of the impaired growth of the protease-deficient strain at 42°C. To evaluate the conformational changes caused by single-site mutations in the MetA protein, we performed molecular dynamics simulations of a homology model based on the closest MetA homolog, homoserine O-succinyltransferase from Thermotoga maritima (PDB code 2H2W). check details Our model has shown that the stabilizing MetA mutations were randomly distributed in different secondary structure elements (Additional file 8: Table S5). Stabilization has been shown for these mutants according to the altered free energy of protein folding (ΔΔG < −1 kcal/mol)

(Additional file 8: Table S5). We observed that the highest ΔΔG value was correlated with the maximal melting temperature (T m ) for the Y229 mutant (Table 1; Enzalutamide Additional file 8: Table S5). We also calculated the cavity volume change as a parameter associated with the conformational stability and folding reaction [24]. The cavity volumes of all mutants were diminished compared with the native enzyme, with maximal decrease for the I229Y substitution (Additional file 8: Table S5). Cavities in proteins are a major contributor to low packing densities and reduced stability [25]. Cavities and surface grooves are also potential sites for the binding of drugs, ligands and other proteins [26]. Therefore, decreased cavity volumes should lead to

higher conformational stability and resistance to aggregation for originally unstable proteins, such as MetA. Thus, MetA might be an inherently unstable protein [27] because Baricitinib it unfolds at room temperature and dramatically loses activity at 30°C or higher [9]. Due to its increased sensitivity to many stress conditions, including temperature, weak organic acids and oxidative stress [7], MetA protein has been suggested to function as a ‘metabolic fuse’ to PF-04929113 in vitro detect unfavorable growth conditions [7]. Conclusions In this study, we further elucidated the mutations in MetA that facilitate faster E. coli growth at elevated temperatures (44°C) compared with the wild-type enzyme. Stabilized MetA proteins partially suppressed the temperature-sensitive phenotype of both dnaK and triple protease deficient mutants. Because improving the growth of E. coli at higher temperatures has an immediate application in realizing the bacterial cell factory, this improvement might also facilitate the identification of target genes and proteins, enabling thermotolerance or improved growth at higher operating temperatures [28–30]. Methods Strains and culture conditions The strains and plasmids used in this study are listed in Table 3.