The first digit following the KIR acronym corresponds to the number of immunoglobulin-like domains in the molecule and the ‘D’ denotes ‘domain’. The D is followed by either an ‘L’, indicating a ‘Long’ cytoplasmic tail, (these proteins have inhibitory function), or ‘S’ indicating a ‘Short’

cytoplasmic tail, (these proteins have activating function), or a ‘P’ for ‘pseudogene’. The final digit indicates the number of the gene encoding a protein with MAPK Inhibitor Library order this structure. Where two or more genes have very similar structures and have very similar sequences, they may be given the same number but distinguished by a final letter, for example, the KIR2DL5A and KIR2DL5B genes.17 KIR alleles are named in a similar fashion to alleles of the HLA system (Fig. 1). Hence, the first three digits distinguish alleles differing in exon sequences that lead to non-synonymous changes. (The HLA nomenclature is on the point of being changed to allow for the expansion in the number of alleles). The next two digits indicate alleles that differ in exon sequences leading to synonymous changes and the last two digits are used for those alleles that only differ in an intron, promoter or other non-coding region. The HLA class I molecules act as ligands for some of the KIR genes. The alleles of the HLA-C locus can be distinguished into two groups of ligands (C1 and C2) by the amino acid present at position 80 of the molecule with approximately

50% of alleles being in each group. HLA-C group 1 with asparagine at position Sirolimus in vivo 80 provides the ligand for KIR2DL2 and KIR2DL3, whereas HLA-C group 2 with lysine at position 80 provides the ligand for KIR2DL1.

Recently it has been shown that whereas KIR2DL1 has only interaction with HLA-C2 group, KIR2DL2, and to a weaker Cepharanthine extent KIR2DL3, also bind to HLA-C2 group.18KIR3DL1 has specificity for the HLA-Bw4 epitope at residues 77–83, present on some HLA-A molecules in addition to many of the HLA-B alleles as each HLA-B allele has a Bw4 or Bw6 epitope. KIR3DL2 has as its ligand HLA-A3 and HLA-A11 allele families but only when certain virally derived peptides are loaded and HLA-G is the ligand for KIR2DL4. As all individuals will carry an HLA-C allele, HLA-C may be more important in the regulation of NK cells. As many of the laboratories interested in typing for presence/absence of KIR genes were histocompatibility laboratories the tendency was to use methods familiar to the laboratory, i.e. sequence-specific primers (SSP)19–22 and sequence-specific oligonucleotide probes (SSOP).23 However, these methods are not able to determine the number of gene copies present. Allele typing is limited and has been performed in only a few laboratories. Continuous discovery of new alleles and the difficulties inherent because of similarity in sequences, even between alleles of different genes, requires constant revision of the SSP and SSOP typing systems.